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| Laboratory Graduates in order of appearance:
Dana Fowlkes:
Dana worked with Jerry at the NIH and used an early version of bioinformatics
to define the control regions of genes coordinately regulated during
the inflammatory response. This lead him to define the sequence GGGAATTCCC
(PNAS 81:2313, 1984) which was later shown to bind NFkB. This same method
defined the sequence that we later recognized
as the HNF-1 binding sites. Dana joined the faculty of the University
of North Carolina at Chapel Hill.
He later
founded
Novalon
and left the
faculty of UNC to direct the company full-time. In June of 2000, he sold
his company to Karo Bio. and
joined their Board of Directors. Check the Wall Street Journal for details. Al Forace: Al worked with Jerry at the NIH and while
the lab wrote a program to search the then newly accumulating DNA sequence
data base to look for genomic repeats as evidence of gene mobility.
Using this approach Al was the first to define large scale genetic repeats
in the mammalian genome
(Science 1983). He
is now head of the Laboratory
of Chemical Carcinogenesis at the NIH in
Bethesda. Al can be reached at: af6z@nih.gov. Read more about him at Nikki Holbrook: Nikki was the person that helped switch the interest of the lab to signaling back in 1983. She cloned the IL-2 gene and with David Durand defined the regulatory regions of the IL-2 gene. She and David began our march backward through the Ca2+/Calcineurin/NF-AT signaling pathway in 1982. Nikki inherited Jerry’s lab when he left the NIH. Later she became Chief of the Laboratory of Genetics at the NIA, NIH. Just recently she joined the faculty at Yale University. See her web page for update
Elaine Evans came to the lab from the Department of Genetics at the University of Leichester in England. She work on expression methods for protein C and definition of the control sequences in Fibrinogen genes that were later used by Gilles Courtois to discover HNF1. Gilles Courtois: Gilles discovered HNF-1 in 1985 while a post doctoral fellow in the laboratory and showed that it regulated a wide group of genes expressed in endodermal cells. He was an Investigator at the Pasteur Institute. gmcourt@pasteur.fr.and just recently moved to The Weizmann Institute of Science, 76100 Rehovot, Israel. See the August 2003 issue of Nature for a recent paper by Gilles group.. Susan Baumheuter: Cloned HNF-1a and HNF-1b while in the lab. Susan helped set up the west coast branch of Celera at a time when it was just starting. Recently she decided to take off some time and raise her children. She can be reached at: sbaumneuter@msn.com.
Jeng Peng Shaw: With David Durand and Paul Utz identified NF-AT as a regulator of early activation genes in T cells that coordinate the immune response. J-P is now a Scientist at Advanced Medicine, Inc. in South San Francisco.
Dirk Mendel: discovered and cloned DCoH as a cofactor for the actions of HNF-1a and HNF-1b (Science 1991). He is now Associate Director for pre-clinical therapeutics at Sugen in South San Francisco. He can be reached at dirk-mendel@sugen.com.
Calvin Kuo: Calvin was graduate student in the laboratory and defined the trancriptional hierachy (Nature 355, 457, 1993) the elements of which are mutated in most cases of inherited diabetes. (MODY). He also made the first observation that rapamycin interfered with the pathways that control protein synthesis (Nature 1993), an observation that was later shown to underlie the mechanism of action of this drug in both yeast and mammalian cells. This was the critical step in defining a signaling pathway that was later shown to relate membrane signals to translational control. After spending some time at Harvard, Calvin came back to Stanford in November of 2000 as an Assistant Professor of Medicine.He can be reached at cjkuo@stanford.edu Cor Verwei: Developed the approach of using small binding sites to regulate indicator genes in transgenic mice (JBC 265, 1990) and showed that NF-AT activity was present in many different cell types. He is presently a Professor at the University of the Netherlands studying autoimmunity. He can be reached at verweij@abcoude.com Mike Flanagan: Mike discovered that NF-AT was made up of two components, one (NF-ATc) was cyclosporin-sensitive and cytoplasmic and required calcium for activation (Nature 1991). The other component, (NF-ATn) was nuclear and newly induced. Mike also developed the first in vitro transcription system that faithfully reflects T lymphocyte activation requirements (Nature 1991). Mike just took over the leadership of Biology Research at Sunesis, started by Jim Wells in South San Francisco. Daryl Thomas: Daryl cloned NFATc3 while in the lab and then went to graduate school. He is currently a graduate student in Bioinformatics in the Haussleer lab at ucsc. He can be reached at:daryl@soe.ucsc.edu. You can find out what he is up to at: http://www.soe.ucsc.edu/~daryl/cv/cv.pdf.
Neil Clipstone: Neil demonstrated that calcineurin was a key component of the lymphyocyte activation pathway and furthermore mapped out the interaction between calcineurin and cyclosporin (Nature 1992). He also developed a way of activating transcription using FK506 to recruit an activation domain to a DNA binding domain (JBC 1993). This was the first use of the two sides of a single molecule for induced dimerization and lead the way to the use of rapamycin and related molecules for the same purpose. Neil is presently an Assistant Professor at Northwestern and can be reached at: NCL420@anima.nums.nwu.edu or see his web page.
Steffan Ho: Steffan developed the method of regulating transcription with synthetic ligands (Nature 382, 822, 1996) which was later taken up by Ariad and Jim Wilson’s gene therapy group and used for the first regulated effective gene therapy in primates. In addition, Steffan cloned NF-ATc1, c2 and NF-ATc3 with Jeff Northrop. Finally Steffan found that calicheamicin oligosaccharide bound to the NF-AT site in DNA and was an effective antigonist, providing the first steps in a path that will hopefully lead to small molecules that block protein-DNA interactions. Steffan is presently an Assistant Professor at UCSD and can be reached at: snho@ucsd.edu or see his web page.
Rick Bram: came to the lab after finishing his residency in Pediatrics. Rick defined the active cyclophilins and based on this information cloned the CAML protein that modulates Ca2+ influx in response to signals and inteacts with the backside of the active cyclophins. Rich went to St Jude Research Institute after leaving the lab and is now Associate Professor at the University of Minnesota. He can be reached at: bramr@mayo.edu.
Leslie Holsinger: Leslie found that the VAV exchange factor for rac was required for formation of the CAP or SMAC signaling complex on lymphocytes and also for T cell receptor signals to activate NFAT-dependent transcription and lead to T cell activation.. In addition, she used synthetic ligands to demonstrate that the SOS exchange factor could be activated by membrane proximity. She now works at Sugen in Redwood City and can be reached at: lholsing@sugen.com
Angela Bauch: Angela was interested in the role of the vav protein in lymphocyte activation and along with Leslie Holsinger did studies that indicated this protein was essential for formation of the immune synapase or cap (PNAS 2000). She is now at the EMBO in Heidelberg. Sang Ho Park: Sang Ho decided to go back to his home country of Korea after finishing his post doc in the lab and can now be reached at.....: He is working in an innovative fusion of the University of Korea and biotechnology.
Ollie Rando: Ollie was an MD/PhD student in the lab. He discovered that the mammalian SWI/SNF-Like BAF complex binds PIP2 and accelerates the rate of actin filament formation. He also studied the genomic transcriptional response to costimulation of T lymphocytes and demonstrated that CD28 induces quantitative rather than qualitative changes in gene activation. His work also lead to the realization that PI3 kinase regulated NFAT signaling by inhibiting nuclear GSK3 and preventing nuclear export of the NFATc proteins. He joined the Harvard Fellows program at the Institute for Chemical Biology where he has his own group and can be reached at: orando@cgr.harvard.edu Ivan Olave: Ivan, Weidong Wang and Uxtong Wang discovered the first neuron-specific chromatin remodeling complex, which we call nBAF (for neuronal complex of Brg/Brm associated factors). They found that the brain specific complex is defined by BAF53b, an actin-related protein found in no other tissue than brain. In recently EST collections BAF53b has the distinction of being the most neuron-specific protein described to date. They found that this neuron specific subunit is present in other chromatin remodeling complexes including one implicated in William's Syndrome. Ivan went to University of Washington. He can be reached at: iolave@ispwest.com.
Mimi Wan: Mimi and Tian Chi worked together as a husband-wife team on defining the developmental roles of the mammalian SWI/SNF or BAF complex in both T cell development and neuronal development. See more details below. Tian Chi: Tian set out to understand the biologic actions of the SWI/SNF-like BAF complex. By making mice with mutations in the DNA binding domain of BAF57 he demonstrated that the DNA binding domain of BAF57 likely plays a critical role in targeting the complex to its target genes. Tian's work also lead to the realization that the complex coordinately suppresses CD4 and activates CD8 to control the T cell developmental lineage. Tian also used a conditional allele of Brg1to show that Brg1 was essential for both Wnt and TCR directed developmental transitions in the thymus. Tian joined the faculty at Yale in Oct of 2003 and is now an Assistant Professor of Microbiology and Immunology. Joel Neilson: Joel made mice with a conditional allele of calcineurin B1, the ubiquitioius regulatory component of calcinerin phosphatase complexes. He found that calcineurin was essential for positive but not negative selection of thymocytes. In addition, he worked with Ching-pin Chang in the lab to show that calcineirn and NFATc proteins are essential for a regulatory exchange between myocardial and endocardial cells that resulted in heart valve development. Joel's alleles of calcineurin are now being used to define the role of calineurin in many aspects of mammalian development, revealing that it may be one of the most widely used signaling pathways in mammalian development. He is presently in Phil Sharp's lab at MIT, working on the role of small RNAs in lymphocyte development. He can be reached at: jneilson@MIT.EDU. Ching-Pin Chang: CP came into the laboratory to understand the role of NFAT signaling in heart development. He and Joel Neilson found that calcineurin-NFATc3/c4 signaling function within a specific region of the myocardium to help pick the site of valve development by repressing the VEGF gene locallly. Surprisingly, they found that calcineurin-NFATc1 is used two days later to regulate the morphogenesis of the valves. This interchange of signals between two adjeacent tissues, both dependent upon calcineurin-NFAT is probably an excellent example of the way this pathway is used to control vertebrate morphogenesis. CP is now Assistant Professor of Medicine and he can be reached at: cpchang@cmgm.stanford.edu. Kryn Stankunas: Kryn was a graduate student from Developmental Biology. He developed a method to regulate the stability of proteins using small molecules that bind to a tag on the protein and allow it to fold to a stable state. He made stains of mice with this tag inserted into the GSK3b gene and with Hank Bayle a strain with the same tag inserted into the Pax6 gene. This approach has proved to be very useful for the rapid, reversible regulation of genes at the level of the protein. Kryn is presently working with CP Chang and can be reached at Kryn@leland.stanford.edu. Jason Gestwicki: Jason came to our lab from Laura Kiessling’s laboratory. Laura was a graduate student of Stuart Schreiber, so Jason is a scientific grandson of Stuart. Jason did all of the chemistry and biophysics for the development of a new method of making inhibitors of protein-protein interactions (see Science 2004). His love of the midwest lead him to go to the University of Michigan. For a cool recent paper from Jason’s new lab see (J Biol Chem. 2006 Sep 14) He is now an assistant professor and can be reached at: gestwick@lsi.umich.edu Isabella A. Graef- Isabella initiated many new areas of research in our lab including work on the development of the nervous system and the development of the cardiovascular system. She demonstrated that the assembly and patterning of vessels in the mouse embyro requires calcineurin signaling through NFATc3/c4 (Cell 2001). Much of the role of NFAT signaling appears to be mediated by regulation of VEGF expression. She initiated studies of the role of calcineurin/NFAT in the nervous system, demonstrating that these proteins were regulated by L-type calcium channels in adult neurons (Nature 1999) and responded selectively to stimuli of different frequency. She found that axon outgrowth in the early embryo in response to netin and neurotrophins (and perhaps other guidance cues) requires calcineurin B1 and NFATc2/c3/c4. Her work demonstrated that these guidance clues us calcineurin and NFATc proteins to accelerate the rate of advance of the growth cone, allowing it to meet developmental time deadlines (Cell 2003). To do this work Isabella worked with Fan Wang from Mark Tessier-Lavigne’s lab. Fan is now on the faculty at Duke. Isabella had the original insight that the defects in the NFATc and calcineurin mutant mice reproduced essentially all of the characteristics of Down Syndrome, leading to the discovery that overexpression of two genes, DSCR1 and Dyrk1a, in the critical region of chromosome 21accounted for many of the characteristics of this disease (Nature 2006). She now has her own lab at Stanford University and can be reached at: igraef@stanford.edu. Monte Winslow- Monte was a graduate student in the lab and explored the role of calcineurin/NFAT signaling in the development and function of the immune system. He worked with Joel Neilson to demonstrate that signaling by calcineurinB1 was essential for positive selection of T lymphocytes and for immunogenic but not the tolerogenic role of B cells (Immunity 2006). Monte with Mingque Pan also found that slightly increasing the concentration of NFATc1 in the nuclei of osteoblasts resulted in fantastic deposition of bone and perhaps the boniest mouse in history (Dev Cell 2006). Monte also worked with Jeremy Heit in Seung Kim’s laboratory to demonstrate that calcineurin, acting through NFATc1 was essential for the development and function of pancreactic b cells, and that it might play a role in diabetes by regulating the MODY genes (Nature 2006). Monte went to Tyler Jack’s lab at MIT. He can be reached at mwinslow@MIT.EDU. Minggui Pan- Minggui made mice expressing NFATc1 at slightly higher levels in the nucleus and showed that slightly tipping the balance of nuclear NFATc1 will result in dramatic phenotypes in the developing mouse; leading to a fantastic increase in bone formation and to spontaneous T cell activation. His work indicates that the second signal (through CD28) required for T cell activation probably functions by slowing the rate of export of NFATc proteins from the nucleus. Minggui is an MD/PhD and decided that his first love was medicine and hence has taken up the full time practice of oncology. He can be reached at: Minggui.Pan@kp.org. Joe Arron- Joe worked with Isabella Graef to define the role of Dyrk1a as the nuclear export kinase of NFATc family members, contributing to our understanding of the role of this kinase in producing the various phenotypes of Down Syndrome. He also studied mice containing the small molecule (MaRap) regulated allele of GSK3b made by Kryn Stankunas in the lab, showing with Karen Lui that one could rescue the mutant phenotype of the mice by administering MaRap. He is now at Genentech and he can now be reached at their web site. Hank Bayle- Hank made alleles of genes that can be rapidly and reversibly regulated with small molecules. He built alleles of Pax6 and GSK3b and made mice by homologous recombination that allow regulated degradation of these proteins. Perhaps most exciting are mice having alleles of FKBP12 that have a nuclear export sequence knocked into them allowing rapid export of proteins from the nucleus. These mice should allow an unprecedented level of control over the function of any nuclear protein. Hank contributed to many other studies in the lab including the design of new classes of macrolide based small molecule regulators and joined the faculty at Baylor University in the fall of 2006. He can be reached at: bayle@bcm.tmc.edu. Karen Lui- Karen used mice made by Kryn Stankunas in the lab, which contain a small-molecule regulated allele of GSK3b that could be rapidly stabilized to study the developmental roles of this protein. Her work defined a surprising function of GSK3b and was published in Nature 446,, 79-82, 2007. She along with Hank Bayle also showed that phenotypes in these mice could be rescued by small molecule administration. She moved to London in Dec 2006 and joined the Developmental Biology faculty of the University College of London. she can be reached at: karen.liu@kcl.ac.uk. Hai Wu- Hai studied the role of calcineurin-NFAT siginaling in the development of the vertebrate nervous system. He found that mice with mutations in the components of the pathway lack certain neuonal cell types and have cell fate transitions. This phenotype appears to reflect an intersection with the Hedghog pathway. He is settling into a new job and we don't have his contact information yet. Shih-Chu Kao- Shi-Chu investigated the role of calineurin-NFAT signaling in the development of the neural crest. She found that calcineurin is essential for the production of myleinating Schwann cells. I appears to assume specificity in the Schwann cells by cooperating with Sox10.
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